PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.007G371300.1
Common NameB456_007G371300, LOC105761782
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family C2H2
Protein Properties Length: 305aa    MW: 32838.5 Da    PI: 4.4297
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.007G371300.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H215.74.2e-05277300123
                         EEETTTTEEESSHHHHHHHHHH.T CS
             zf-C2H2   1 ykCpdCgksFsrksnLkrHirt.H 23 
                         ++C+ Cg+sF +   L++H +  H
  Gorai.007G371300.1 277 FPCKSCGRSFGSENALQSHSKAkH 300
                         89*****************88777 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003550.0052277300IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015711.011277300IPR007087Zinc finger, C2H2
PROSITE patternPS000280279300IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 305 aa     Download sequence    Send to blast
MEFWGAEVKS GQSFEVELED DGSRILHISQ AALGEVTSDN KKEKGNGTAC IYLKFNNEKF  60
VIGTLSHDKF PQMPLDLALH SKFELSHTWK NGSVYFTGYY VDTPQGSGSE SEEELPEPIV  120
NPVKPHATIS DPTTSKQVKI VEPKKAEDSS DDEDEDDTST EDEMSSEDQE PGMLVNGENE  180
SDNDTDSDED DSEEESSDED PETPETEKAG PSKKRSAESA TKTPAPEKKA KLVTPQKTDG  240
KKVGGHTATP HPSKEARKAS ATTGQVNQSA KPGGSSFPCK SCGRSFGSEN ALQSHSKAKH  300
GIAV*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012435157.10.0PREDICTED: histone deacetylase HDT1-like isoform X1
TrEMBLA0A0D2PKC30.0A0A0D2PKC3_G
STRINGPOPTR_0006s11770.12e-73(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM20272667
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G03740.11e-26histone deacetylase 2C
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]